From 09a53969828ead5dd6a231e5db3b4a765fca47d3 Mon Sep 17 00:00:00 2001
From: Orivej Desh <orivej@gmx.fr>
Date: Sun, 1 Oct 2017 07:30:56 +0000
Subject: [PATCH] samtools: fix up

---
 .../science/biology/samtools/default.nix        | 17 ++++++++---------
 1 file changed, 8 insertions(+), 9 deletions(-)

diff --git a/pkgs/applications/science/biology/samtools/default.nix b/pkgs/applications/science/biology/samtools/default.nix
index 0f1f4692eb71..640f32671bbd 100644
--- a/pkgs/applications/science/biology/samtools/default.nix
+++ b/pkgs/applications/science/biology/samtools/default.nix
@@ -3,29 +3,28 @@
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
   pname = "samtools";
-  major = "1.6";
-  version = "${major}.0";
+  version = "1.6";
 
   src = fetchurl {
-    url = "https://github.com/samtools/samtools/releases/download/${major}/samtools-${major}.tar.bz2";
+    url = "https://github.com/samtools/samtools/releases/download/${version}/${name}.tar.bz2";
     sha256 = "17p4vdj2j2qr3b2c0v4100h6cg4jj3zrb4dmdnd9d9aqs74d4p7f";
   };
 
-  buildInputs = [ zlib ncurses ];
+  nativeBuildInputs = [ perl ];
 
-  propagatedBuildInputs = [ htslib ];
+  buildInputs = [ zlib ncurses htslib ];
 
   configureFlags = [ "--with-htslib=${htslib}" ]
     ++ stdenv.lib.optional (ncurses == null) "--without-curses";
 
+  preCheck = ''
+    patchShebangs test/
+  '';
+
   enableParallelBuilding = true;
 
   doCheck = true;
 
-  preCheck = ''
-    sed -ie 's|/usr/bin/\(env[[:space:]]\)\{0,1\}perl|${perl}/bin/perl|' test/test.pl
-  '';
-
   meta = with stdenv.lib; {
     description = "Tools for manipulating SAM/BAM/CRAM format";
     license = licenses.mit;