From 05a7ac3b2afcbe8d5fb6b5492201b6c8b3fdcf0c Mon Sep 17 00:00:00 2001
From: Ben Darwin <bcdarwin@gmail.com>
Date: Fri, 17 Apr 2020 00:55:38 -0400
Subject: [PATCH] python3Packages.mne-python: init at 0.21.2

---
 .../python-modules/mne-python/default.nix     | 59 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 +
 2 files changed, 61 insertions(+)
 create mode 100644 pkgs/development/python-modules/mne-python/default.nix

diff --git a/pkgs/development/python-modules/mne-python/default.nix b/pkgs/development/python-modules/mne-python/default.nix
new file mode 100644
index 000000000000..84babe171897
--- /dev/null
+++ b/pkgs/development/python-modules/mne-python/default.nix
@@ -0,0 +1,59 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, isPy27
+, numpy
+, scipy
+, pytestCheckHook
+, pytestcov
+, pytest-timeout
+, h5py
+, matplotlib
+, nibabel
+, pandas
+, scikitlearn
+}:
+
+buildPythonPackage rec {
+  pname = "mne-python";
+  version = "0.21.2";
+
+  disabled = isPy27;
+
+  # PyPI dist insufficient to run tests
+  src = fetchFromGitHub {
+    owner = "mne-tools";
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "18nfdbkffmxzkkbp3d4w8r2kfi0sxip3hy997d3mx6dy74jc7nmg";
+  };
+
+  propagatedBuildInputs = [ numpy scipy ];
+
+  # all tests pass, but Pytest hangs afterwards - probably some thread hasn't terminated
+  doCheck = false;
+  checkInputs = [
+    pytestCheckHook
+    pytestcov
+    pytest-timeout
+    h5py
+    matplotlib
+    nibabel
+    pandas
+    scikitlearn
+  ];
+  preCheck = ''
+    export HOME=$TMP
+    export MNE_SKIP_TESTING_DATASET_TESTS=true
+    export MNE_SKIP_NETWORK_TESTS=1
+  '';
+
+  pythonImportsCheck = [ "mne" ];
+
+  meta = with lib; {
+    homepage = "https://mne.tools";
+    description = "Magnetoencephelography and electroencephalography in Python";
+    license = licenses.bsd3;
+    maintainers = with maintainers; [ bcdarwin ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index ad09b13d6c7d..43c4ad00d216 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -3813,6 +3813,8 @@ in {
 
   mnemonic = callPackage ../development/python-modules/mnemonic { };
 
+  mne-python = callPackage ../development/python-modules/mne-python { };
+
   mnist = callPackage ../development/python-modules/mnist { };
 
   mocket = callPackage ../development/python-modules/mocket { };