2020-02-24 23:11:48 +01:00
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{ lib
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, buildPythonPackage
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, fetchFromGitHub
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, isPy27
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, packaging
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, pytest
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, cython
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, numpy
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, scipy
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, h5py
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, nibabel
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2020-11-14 00:46:13 +01:00
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, tqdm
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2020-02-24 23:11:48 +01:00
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}:
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buildPythonPackage rec {
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pname = "dipy";
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2020-11-14 00:46:13 +01:00
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version = "1.3.0";
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2020-02-24 23:11:48 +01:00
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disabled = isPy27;
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src = fetchFromGitHub {
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owner = "dipy";
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repo = pname;
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rev = version;
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2020-11-14 00:46:13 +01:00
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sha256 = "0555abx0fwqmk6dc3im7r45d9j7r9xh6gm9mbwfwvlf7laf8h098";
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2020-02-24 23:11:48 +01:00
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};
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nativeBuildInputs = [ cython packaging ];
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propagatedBuildInputs = [
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numpy
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scipy
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h5py
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nibabel
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2020-11-14 00:46:13 +01:00
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tqdm
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2020-02-24 23:11:48 +01:00
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];
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checkInputs = [ pytest ];
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# disable tests for now due to:
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# - some tests require data download (see dipy/dipy/issues/2092);
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# - running the tests manually causes a multiprocessing hang;
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# - import weirdness when running the tests
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doCheck = false;
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pythonImportsCheck = [
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"dipy"
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"dipy.core"
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"dipy.direction"
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"dipy.tracking"
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"dipy.reconst"
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"dipy.io"
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"dipy.viz"
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"dipy.boots"
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"dipy.data"
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"dipy.utils"
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"dipy.segment"
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"dipy.sims"
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"dipy.stats"
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"dipy.denoise"
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"dipy.workflows"
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"dipy.nn"
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];
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meta = with lib; {
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homepage = "https://dipy.org/";
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description = "Diffusion imaging toolkit for Python";
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license = licenses.bsd3;
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maintainers = with maintainers; [ bcdarwin ];
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};
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}
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