2017-11-18 21:38:27 +01:00
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{ stdenv
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, fetchurl
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, removeReferencesTo
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, cpp ? false
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, gfortran ? null
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2017-11-18 21:45:59 +01:00
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, fortran2003 ? false
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2017-11-18 21:38:27 +01:00
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, zlib ? null
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, szip ? null
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, mpi ? null
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, enableShared ? true
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}:
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# cpp and mpi options are mutually exclusive
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# (--enable-unsupported could be used to force the build)
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assert !cpp || mpi == null;
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2017-11-18 21:45:59 +01:00
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# Need a Fortran compiler for Fortran2003 bindings
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assert fortran2003 -> gfortran != null;
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2017-11-18 21:38:27 +01:00
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# No point splitting version 1.8.18 into multiple outputs.
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# The library /lib/libhdf5.so has a reference to gcc-wrapper
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let inherit (stdenv.lib) optional optionals; in
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stdenv.mkDerivation rec {
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2017-11-18 21:41:55 +01:00
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version = "1.8.19";
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2019-08-15 14:41:18 +02:00
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pname = "hdf5";
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2017-11-18 21:38:27 +01:00
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src = fetchurl {
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2019-08-15 14:41:18 +02:00
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url = "https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/${pname}-${version}/src/${pname}-${version}.tar.bz2";
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2017-11-18 21:41:55 +01:00
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sha256 = "0f3jfbqpaaq21ighi40qzs52nb52kc2d2yjk541rjmsx20b3ih2r" ;
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2017-11-18 21:38:27 +01:00
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};
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passthru = {
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mpiSupport = (mpi != null);
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inherit mpi;
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};
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nativeBuildInputs = [ removeReferencesTo ];
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buildInputs = []
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++ optional (gfortran != null) gfortran
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++ optional (szip != null) szip;
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propagatedBuildInputs = []
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++ optional (zlib != null) zlib
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++ optional (mpi != null) mpi;
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configureFlags = []
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++ optional cpp "--enable-cxx"
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++ optional (gfortran != null) "--enable-fortran"
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2017-11-18 21:45:59 +01:00
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++ optional fortran2003 "--enable-fortran2003"
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2017-11-18 21:38:27 +01:00
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++ optional (szip != null) "--with-szlib=${szip}"
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++ optionals (mpi != null) ["--enable-parallel" "CC=${mpi}/bin/mpicc"]
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++ optional enableShared "--enable-shared";
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patches = [./bin-mv.patch];
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postInstall = ''
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find "$out" -type f -exec remove-references-to -t ${stdenv.cc} '{}' +
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'';
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meta = {
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description = "Data model, library, and file format for storing and managing data";
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longDescription = ''
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HDF5 supports an unlimited variety of datatypes, and is designed for flexible and efficient
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I/O and for high volume and complex data. HDF5 is portable and is extensible, allowing
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applications to evolve in their use of HDF5. The HDF5 Technology suite includes tools and
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applications for managing, manipulating, viewing, and analyzing data in the HDF5 format.
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'';
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license = stdenv.lib.licenses.free; # BSD-like
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homepage = https://www.hdfgroup.org/HDF5/;
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platforms = stdenv.lib.platforms.unix;
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broken = (gfortran != null) && stdenv.isDarwin;
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};
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}
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