nixpkgs-suyu/pkgs/applications/science/biology/niftyseg/default.nix

{ lib, stdenv, fetchurl, cmake, eigen, zlib }:

stdenv.mkDerivation rec {
  pname   = "niftyseg";
  version = "1.0";
  src = fetchurl {
    url    = "https://github.com/KCL-BMEIS/NiftySeg/archive/v${version}.tar.gz";
    sha256 = "11q6yldsxp3k6gfp94c0xhcan2y3finzv8lzizmrc79yps3wjkn0";
  };

  nativeBuildInputs = [ cmake ];
  buildInputs = [ eigen zlib ];

  meta = with lib; {
    homepage = "http://cmictig.cs.ucl.ac.uk/research/software/software-nifty/niftyseg";
    description = "Software for medical image segmentation, bias field correction, and cortical thickness calculation";
    maintainers = with maintainers; [ bcdarwin ];
    platforms = platforms.unix;
    license   = licenses.bsd3;
  };

}
treewide: with stdenv.lib; in meta -> with lib; Part of: https://github.com/NixOS/nixpkgs/issues/108938 meta = with stdenv.lib; is a widely used pattern. We want to slowly remove the `stdenv.lib` indirection and encourage people to use `lib` directly. Thus let’s start with the meta field. This used a rewriting script to mostly automatically replace all occurances of this pattern, and add the `lib` argument to the package header if it doesn’t exist yet. The script in its current form is available at https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix 2021-01-11 08:54:33 +01:00			`{ lib, stdenv, fetchurl, cmake, eigen, zlib }:`
niftyseg: init at 1.0.0 2018-11-15 23:34:57 +01:00
			`stdenv.mkDerivation rec {`
			`pname = "niftyseg";`
			`version = "1.0";`
			`src = fetchurl {`
			`url = "https://github.com/KCL-BMEIS/NiftySeg/archive/v${version}.tar.gz";`
			`sha256 = "11q6yldsxp3k6gfp94c0xhcan2y3finzv8lzizmrc79yps3wjkn0";`
			`};`

			`nativeBuildInputs = [ cmake ];`
			`buildInputs = [ eigen zlib ];`

treewide: with stdenv.lib; in meta -> with lib; Part of: https://github.com/NixOS/nixpkgs/issues/108938 meta = with stdenv.lib; is a widely used pattern. We want to slowly remove the `stdenv.lib` indirection and encourage people to use `lib` directly. Thus let’s start with the meta field. This used a rewriting script to mostly automatically replace all occurances of this pattern, and add the `lib` argument to the package header if it doesn’t exist yet. The script in its current form is available at https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix 2021-01-11 08:54:33 +01:00			`meta = with lib; {`
treewide: Per RFC45, remove all unquoted URLs 2020-04-01 03:11:51 +02:00			`homepage = "http://cmictig.cs.ucl.ac.uk/research/software/software-nifty/niftyseg";`
niftyseg: init at 1.0.0 2018-11-15 23:34:57 +01:00			`description = "Software for medical image segmentation, bias field correction, and cortical thickness calculation";`
			`maintainers = with maintainers; [ bcdarwin ];`
nifticlib and niftseg: change platform from linux to unix since these build on OSX 2019-11-15 03:25:10 +01:00			`platforms = platforms.unix;`
niftyseg: init at 1.0.0 2018-11-15 23:34:57 +01:00			`license = licenses.bsd3;`
			`};`

			`}`