2020-10-30 09:42:10 +01:00
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{ lib, python, fetchFromGitHub }:
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2019-10-31 19:34:05 +01:00
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with python.pkgs;
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buildPythonApplication rec {
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pname = "deepTools";
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2022-01-21 06:36:24 +01:00
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version = "3.5.1";
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2019-10-31 19:34:05 +01:00
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2020-10-30 09:42:10 +01:00
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src = fetchFromGitHub {
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owner = "deeptools";
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repo = "deepTools";
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rev = version;
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2022-01-21 06:36:24 +01:00
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sha256 = "07v8vb2x4b0mgw0mvcj91vj1fqbcwizwsniysl2cvmv93gad8gbp";
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2019-10-31 19:34:05 +01:00
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};
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propagatedBuildInputs = [
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numpy
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numpydoc
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scipy
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py2bit
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pybigwig
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pysam
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matplotlib
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plotly
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deeptoolsintervals
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];
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2020-10-30 09:42:10 +01:00
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checkInputs = [ nose ];
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2019-10-31 19:34:05 +01:00
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meta = with lib; {
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homepage = "https://deeptools.readthedocs.io/en/develop";
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description = "Tools for exploring deep DNA sequencing data";
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longDescription = ''
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deepTools contains useful modules to process the mapped reads data for multiple
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quality checks, creating normalized coverage files in standard bedGraph and bigWig
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file formats, that allow comparison between different files (for example, treatment and control).
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Finally, using such normalized and standardized files, deepTools can create many
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publication-ready visualizations to identify enrichments and for functional
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annotations of the genome.
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'';
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license = licenses.gpl3;
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maintainers = with maintainers; [ scalavision ];
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};
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}
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